SIMPA toolkit
SIMPA examples
Package reference
CurvedArrayDetectionGeometry
DetectionGeometryBase
LinearArrayDetectionGeometry
PlanarArrayDetectionGeometry
DiskIlluminationGeometry
GaussianBeamIlluminationGeometry
IlluminationGeometryBase
MSOTAcuityIlluminationGeometry
MSOTInVisionIlluminationGeometry
PencilArrayIlluminationGeometry
PencilBeamIlluminationGeometry
RectangleIlluminationGeometry
RingIlluminationGeometry
SlitIlluminationGeometry
MSOTAcuityEcho
InVision256TF
RSOMExplorerP50
PhotoacousticDevice
DigitalDeviceTwinBase
DigitalDeviceTwinBase.__eq__()
DigitalDeviceTwinBase.check_settings_prerequisites()
DigitalDeviceTwinBase.deserialize()
DigitalDeviceTwinBase.generate_uuid()
DigitalDeviceTwinBase.get_field_of_view_mm()
DigitalDeviceTwinBase.serialize()
DigitalDeviceTwinBase.update_settings_for_use_of_model_based_volume_creator()
FieldOfViewCropping
IterativeqPAI
LinearUnmixing
MultispectralProcessingAlgorithm
ProcessingComponentBase
create_reconstruction_settings()
DelayAndSumAdapter
reconstruct_delay_and_sum_pytorch()
DelayMultiplyAndSumAdapter
reconstruct_delay_multiply_and_sum_pytorch()
ReconstructionAdapterBase
ReconstructionTestAdapter
apply_b_mode()
bandpass_filter_with_settings()
butter_bandpass_filtering()
butter_bandpass_filtering_with_settings()
compute_delay_and_sum_values()
compute_image_dimensions()
get_apodization_factor()
preparing_reconstruction_and_obtaining_reconstruction_settings()
reconstruction_mode_transformation()
tukey_bandpass_filtering()
tukey_bandpass_filtering_with_settings()
tukey_window_function()
SignedDelayMultiplyAndSumAdapter
reconstruct_signed_delay_multiply_and_sum_pytorch()
TimeReversalAdapter
ModelBasedAdapter
SegmentationBasedAdapter
VolumeCreationAdapterBase
SimulationModuleBase
SimulationModuleBase.get_additional_flags()
SimulationModuleBase.load_component_settings()
PipelineElementBase
PipelineElementBase.run()
simulate()
load_data_field()
load_hdf5()
save_data_field()
save_hdf5()
IpascSimpaAdapter
IpascSimpaAdapter.generate_binary_data()
IpascSimpaAdapter.generate_device_meta_data()
IpascSimpaAdapter.set_metadata_value()
export_to_ipasc()
download_from_zenodo()
Logger
Logger.critical()
Logger.debug()
Logger.deserialize()
Logger.error()
Logger.info()
Logger.serialize()
Logger.warning()
priority_sorted_structures()
Background
define_background_structure_settings()
CircularTubularStructure
define_circular_tubular_structure_settings()
EllipticalTubularStructure
define_elliptical_tubular_structure_settings()
HorizontalLayerStructure
define_horizontal_layer_structure_settings()
ParallelepipedStructure
define_parallelepiped_structure_settings()
RectangularCuboidStructure
define_rectangular_cuboid_structure_settings()
SphericalStructure
define_spherical_structure_settings()
GeometricalStructure
VesselStructure
define_vessel_structure_settings()
BlobHeterogeneity
HeterogeneityGeneratorBase
HeterogeneityGeneratorBase.get_map()
HeterogeneityGeneratorBase.normalise_map()
ImageHeterogeneity
ImageHeterogeneity.map
ImageHeterogeneity.change_resolution()
ImageHeterogeneity.crop_image()
ImageHeterogeneity.upsize_to_fill_area()
RandomHeterogeneity
MorphologicalTissueProperties
MorphologicalTissueProperties.ACCOMPANYING_VEIN_DEPTH_STD_MM
MorphologicalTissueProperties.ACCOMPANYING_VEIN_DISTANCE_MEAN_MM
MorphologicalTissueProperties.ACCOMPANYING_VEIN_DISTANCE_STD_MM
MorphologicalTissueProperties.ACCOMPANYING_VEIN_MEDIAN_DISTANCE_MEAN_MM
MorphologicalTissueProperties.ACCOMPANYING_VEIN_MEDIAN_DISTANCE_STD_MM
MorphologicalTissueProperties.ARTERY_X_POSITION_UNCERTAINTY_MM
MorphologicalTissueProperties.DERMIS_THICKNESS_MEAN_MM
MorphologicalTissueProperties.DERMIS_THICKNESS_STD_MM
MorphologicalTissueProperties.DISTANCE_RADIAL_AND_ULNA_ARTERY_MEAN_MM
MorphologicalTissueProperties.DISTANCE_RADIAL_AND_ULNA_ARTERY_STD_MM
MorphologicalTissueProperties.EPIDERMIS_THICKNESS_MEAN_MM
MorphologicalTissueProperties.EPIDERMIS_THICKNESS_STD_MM
MorphologicalTissueProperties.MEDIAN_ARTERY_DEPTH_MEAN_MM
MorphologicalTissueProperties.MEDIAN_ARTERY_DEPTH_STD_MM
MorphologicalTissueProperties.MEDIAN_ARTERY_DIAMETER_MEAN_MM
MorphologicalTissueProperties.MEDIAN_ARTERY_DIAMETER_STD_MM
MorphologicalTissueProperties.MEDIAN_ARTERY_X_POSITION_MEAN_MM
MorphologicalTissueProperties.MEDIAN_VEIN_DIAMETER_MEAN_MM
MorphologicalTissueProperties.MEDIAN_VEIN_DIAMETER_STD_MM
MorphologicalTissueProperties.RADIAL_ARTERY_DEPTH_MEAN_MM
MorphologicalTissueProperties.RADIAL_ARTERY_DEPTH_STD_MM
MorphologicalTissueProperties.RADIAL_ARTERY_DIAMETER_MEAN_MM
MorphologicalTissueProperties.RADIAL_ARTERY_DIAMETER_STD_MM
MorphologicalTissueProperties.RADIAL_ARTERY_X_POSITION_MEAN_MM
MorphologicalTissueProperties.RADIAL_VEIN_DIAMETER_MEAN_MM
MorphologicalTissueProperties.RADIAL_VEIN_DIAMETER_STD_MM
MorphologicalTissueProperties.RADIUS_BONE_DEPTH_MEAN_MM
MorphologicalTissueProperties.RADIUS_BONE_DEPTH_STD_MM
MorphologicalTissueProperties.RADIUS_BONE_DIAMETER_MEAN_MM
MorphologicalTissueProperties.RADIUS_BONE_DIAMETER_STD_MM
MorphologicalTissueProperties.RADIUS_ULNA_BONE_POSITION_STD_MM
MorphologicalTissueProperties.RADIUS_ULNA_BONE_SEPARATION_MEAN_MM
MorphologicalTissueProperties.SUBCUTANEOUS_VEIN_DEPTH_MEAN_MM
MorphologicalTissueProperties.SUBCUTANEOUS_VEIN_DEPTH_STD_MM
MorphologicalTissueProperties.SUBCUTANEOUS_VEIN_DIAMETER_MEAN_MM
MorphologicalTissueProperties.SUBCUTANEOUS_VEIN_DIAMETER_STD_MM
MorphologicalTissueProperties.ULNAR_ARTERY_DEPTH_MEAN_MM
MorphologicalTissueProperties.ULNAR_ARTERY_DEPTH_STD_MM
MorphologicalTissueProperties.ULNAR_ARTERY_DIAMETER_MEAN_MM
MorphologicalTissueProperties.ULNAR_ARTERY_DIAMETER_STD_MM
MorphologicalTissueProperties.ULNAR_ARTERY_X_POSITION_MEAN_MM
MorphologicalTissueProperties.ULNAR_VEIN_DIAMETER_MEAN_MM
MorphologicalTissueProperties.ULNAR_VEIN_DIAMETER_STD_MM
MorphologicalTissueProperties.ULNA_BONE_DEPTH_MEAN_MM
MorphologicalTissueProperties.ULNA_BONE_DEPTH_STD_MM
MorphologicalTissueProperties.ULNA_BONE_DIAMETER_MEAN_MM
MorphologicalTissueProperties.ULNA_BONE_DIAMETER_STD_MM
OpticalTissueProperties
OpticalTissueProperties.ARTERIAL_OXYGENATION
OpticalTissueProperties.ARTERIAL_OXYGENATION_VARIATION
OpticalTissueProperties.BACKGROUND_OXYGENATION
OpticalTissueProperties.BACKGROUND_OXYGENATION_VARIATION
OpticalTissueProperties.BLOOD_ANISOTROPY
OpticalTissueProperties.BLOOD_PLASMA_FRACTION
OpticalTissueProperties.BLOOD_VOLUME_FRACTION_LYMPH_NODE
OpticalTissueProperties.BLOOD_VOLUME_FRACTION_LYMPH_NODE_VARIATION
OpticalTissueProperties.BLOOD_VOLUME_FRACTION_MUSCLE_TISSUE
OpticalTissueProperties.BMIE_BACKGROUND_TISSUE
OpticalTissueProperties.BMIE_BLOOD
OpticalTissueProperties.BMIE_BONE
OpticalTissueProperties.BMIE_DERMIS
OpticalTissueProperties.BMIE_EPIDERMIS
OpticalTissueProperties.BMIE_FAT
OpticalTissueProperties.BMIE_MUSCLE_TISSUE
OpticalTissueProperties.BONE_ABSORPTION
OpticalTissueProperties.DERMIS_ANISOTROPY
OpticalTissueProperties.FRAY_BACKGROUND_TISSUE
OpticalTissueProperties.FRAY_BLOOD
OpticalTissueProperties.FRAY_BONE
OpticalTissueProperties.FRAY_DERMIS
OpticalTissueProperties.FRAY_EPIDERMIS
OpticalTissueProperties.FRAY_FAT
OpticalTissueProperties.FRAY_MUSCLE_TISSUE
OpticalTissueProperties.LYMPH_NODE_OXYGENATION
OpticalTissueProperties.LYMPH_NODE_OXYGENATION_VARIATION
OpticalTissueProperties.MELANIN_VOLUME_FRACTION_MEAN
OpticalTissueProperties.MELANIN_VOLUME_FRACTION_STD
OpticalTissueProperties.MUS500_BACKGROUND_TISSUE
OpticalTissueProperties.MUS500_BLOOD
OpticalTissueProperties.MUS500_BONE
OpticalTissueProperties.MUS500_DERMIS
OpticalTissueProperties.MUS500_EPIDERMIS
OpticalTissueProperties.MUS500_FAT
OpticalTissueProperties.MUS500_MUSCLE_TISSUE
OpticalTissueProperties.STANDARD_ANISOTROPY
OpticalTissueProperties.VENOUS_OXYGENATION
OpticalTissueProperties.VENOUS_OXYGENATION_VARIATION
OpticalTissueProperties.WATER_VOLUME_FRACTION_BONE_MEAN
OpticalTissueProperties.WATER_VOLUME_FRACTION_BONE_STD
OpticalTissueProperties.WATER_VOLUME_FRACTION_HUMAN_BODY
OpticalTissueProperties.WATER_VOLUME_FRACTION_SKIN
StandardProperties
StandardProperties.AIR_G
StandardProperties.AIR_MUA
StandardProperties.AIR_MUS
StandardProperties.ALPHA_COEFF_AIR
StandardProperties.ALPHA_COEFF_BLOOD
StandardProperties.ALPHA_COEFF_BONE
StandardProperties.ALPHA_COEFF_FAT
StandardProperties.ALPHA_COEFF_GEL_PAD
StandardProperties.ALPHA_COEFF_GENERIC
StandardProperties.ALPHA_COEFF_LYMPH_NODE
StandardProperties.ALPHA_COEFF_MUSCLE
StandardProperties.ALPHA_COEFF_SKIN
StandardProperties.ALPHA_COEFF_WATER
StandardProperties.BODY_TEMPERATURE_CELCIUS
StandardProperties.DENSITY_AIR
StandardProperties.DENSITY_BLOOD
StandardProperties.DENSITY_BONE
StandardProperties.DENSITY_FAT
StandardProperties.DENSITY_GEL_PAD
StandardProperties.DENSITY_GENERIC
StandardProperties.DENSITY_HEAVY_WATER
StandardProperties.DENSITY_LYMPH_NODE
StandardProperties.DENSITY_MUSCLE
StandardProperties.DENSITY_SKIN
StandardProperties.DENSITY_WATER
StandardProperties.GELPAD_G
StandardProperties.GELPAD_MUA
StandardProperties.GELPAD_MUS
StandardProperties.HEAVY_WATER_MUA
StandardProperties.SPEED_OF_SOUND_AIR
StandardProperties.SPEED_OF_SOUND_BLOOD
StandardProperties.SPEED_OF_SOUND_BONE
StandardProperties.SPEED_OF_SOUND_FAT
StandardProperties.SPEED_OF_SOUND_GEL_PAD
StandardProperties.SPEED_OF_SOUND_GENERIC
StandardProperties.SPEED_OF_SOUND_HEAVY_WATER
StandardProperties.SPEED_OF_SOUND_LYMPH_NODE
StandardProperties.SPEED_OF_SOUND_MUSCLE
StandardProperties.SPEED_OF_SOUND_SKIN
StandardProperties.SPEED_OF_SOUND_WATER
StandardProperties.WATER_G
StandardProperties.WATER_MUS
MolecularComposition
MolecularComposition.segmentation_type
MolecularComposition.internal_properties
MolecularComposition.deserialize()
MolecularComposition.get_properties_for_wavelength()
MolecularComposition.serialize()
MolecularComposition.update_internal_properties()
MolecularCompositionGenerator
MolecularCompositionGenerator.append()
MolecularCompositionGenerator.get_molecular_composition()
Molecule
Molecule.name
Molecule.spectrum
Molecule.volume_fraction
Molecule.scattering_spectrum
Molecule.anisotropy_spectrum
Molecule.gruneisen_parameter
Molecule.density
Molecule.speed_of_sound
Molecule.alpha_coefficient
Molecule.__eq__()
Molecule.deserialize()
Molecule.get_volume_fraction()
Molecule.serialize()
MoleculeLibrary
MoleculeLibrary.air()
MoleculeLibrary.bone()
MoleculeLibrary.constant_scatterer()
MoleculeLibrary.deoxyhemoglobin()
MoleculeLibrary.dermal_scatterer()
MoleculeLibrary.epidermal_scatterer()
MoleculeLibrary.fat()
MoleculeLibrary.heavy_water()
MoleculeLibrary.mediprene()
MoleculeLibrary.melanin()
MoleculeLibrary.muscle_scatterer()
MoleculeLibrary.oxyhemoglobin()
MoleculeLibrary.soft_tissue_scatterer()
MoleculeLibrary.water()
AbsorptionSpectrumLibrary
AbsorptionSpectrumLibrary.CONSTANT_ABSORBER_ARBITRARY()
AnisotropySpectrumLibrary
AnisotropySpectrumLibrary.CONSTANT_ANISOTROPY_ARBITRARY()
ScatteringSpectrumLibrary
ScatteringSpectrumLibrary.CONSTANT_SCATTERING_ARBITRARY()
ScatteringSpectrumLibrary.scattering_from_rayleigh_and_mie_theory()
SpectraLibrary
SpectraLibrary.spectra
SpectraLibrary.add_spectra_from_folder()
SpectraLibrary.get_spectra_names()
SpectraLibrary.get_spectrum_by_name()
Spectrum
Spectrum.spectrum_name
Spectrum.wavelengths
Spectrum.max_wavelength
Spectrum.min_wavelength
Spectrum.values
Spectrum.values_interp
Spectrum.__eq__()
Spectrum.deserialize()
Spectrum.get_value_for_wavelength()
Spectrum.get_value_over_wavelength()
Spectrum.serialize()
get_simpa_internal_absorption_spectra_by_names()
view_saved_spectra()
TissueLibrary
TissueLibrary.blood()
TissueLibrary.bone()
TissueLibrary.constant()
TissueLibrary.dermis()
TissueLibrary.epidermis()
TissueLibrary.generic_tissue()
TissueLibrary.get_blood_volume_fractions()
TissueLibrary.heavy_water()
TissueLibrary.lymph_node()
TissueLibrary.mediprene()
TissueLibrary.muscle()
TissueLibrary.soft_tissue()
TissueLibrary.subcutaneous_fat()
TissueLibrary.ultrasound_gel()
assert_array_well_defined()
assert_equal_shapes()
are_equal()
calculate_bvf()
calculate_gruneisen_parameter_from_temperature()
calculate_oxygenation()
create_spline_for_range()
extract_hemoglobin_fractions()
min_max_normalization()
positive_gauss()
randomize_uniform()
rotation()
rotation_matrix_between_vectors()
rotation_x()
rotation_y()
rotation_z()
round_x5_away_from_zero()
spline_evaluator2d_voxel()
EPS
SegmentationClasses
SegmentationClasses.AIR
SegmentationClasses.BLOOD
SegmentationClasses.BONE
SegmentationClasses.COUPLING_ARTIFACT
SegmentationClasses.DERMIS
SegmentationClasses.EPIDERMIS
SegmentationClasses.FAT
SegmentationClasses.GENERIC
SegmentationClasses.HEAVY_WATER
SegmentationClasses.LYMPH_NODE
SegmentationClasses.MEDIPRENE
SegmentationClasses.MUSCLE
SegmentationClasses.SOFT_TISSUE
SegmentationClasses.ULTRASOUND_GEL
SegmentationClasses.WATER
create_deformation_settings()
get_functional_from_deformation_settings()
generate_dict_path()
get_data_field_from_simpa_output()
generate_matlab_cmd()
PathManager
PathManager.detect_local_path_config()
PathManager.get_hdf5_file_save_path()
PathManager.get_matlab_binary_path()
PathManager.get_mcx_binary_path()
PathManager.get_path_from_environment()
get_processing_device()
profile()
SerializableSIMPAClass
SerializableSIMPAClass.deserialize()
SerializableSIMPAClass.serialize()
Settings
Settings.deserialize()
Settings.get_acoustic_settings()
Settings.get_optical_settings()
Settings.get_reconstruction_settings()
Settings.get_volume_creation_settings()
Settings.get_volume_dimensions_voxels()
Settings.serialize()
Settings.set_acoustic_settings()
Settings.set_optical_settings()
Settings.set_reconstruction_settings()
Settings.set_volume_creation_settings()
Tags
Tags.ACOUSTIC_LOG_SCALE
Tags.ACOUSTIC_MODEL
Tags.ACOUSTIC_MODEL_BINARY_PATH
Tags.ACOUSTIC_MODEL_K_WAVE
Tags.ACOUSTIC_MODEL_OUTPUT_NAME
Tags.ACOUSTIC_MODEL_SETTINGS
Tags.ACOUSTIC_MODEL_TEST
Tags.ACOUSTIC_SIMULATION_3D
Tags.ADDITIONAL_FLAGS
Tags.ADHERE_TO_DEFORMATION
Tags.BACKGROUND
Tags.BANDPASS_CUTOFF_HIGHPASS_IN_HZ
Tags.BANDPASS_CUTOFF_LOWPASS_IN_HZ
Tags.BANDPASS_FILTER_METHOD
Tags.BUTTERWORTH_BANDPASS_FILTER
Tags.BUTTERWORTH_FILTER_ORDER
Tags.CHILD_STRUCTURES
Tags.CIRCULAR_TUBULAR_STRUCTURE
Tags.COMPUTE_DIFFUSE_REFLECTANCE
Tags.COMPUTE_PHOTON_DIRECTION_AT_EXIT
Tags.CONSIDER_PARTIAL_VOLUME
Tags.CONSIDER_PARTIAL_VOLUME_IN_DEVICE
Tags.CONTINUE_SIMULATION
Tags.CROP_POSITION_BOTTOM
Tags.CROP_POSITION_CENTRE
Tags.CROP_POSITION_LEFT
Tags.CROP_POSITION_RANDOM
Tags.CROP_POSITION_RIGHT
Tags.CROP_POSITION_TOP
Tags.DATA_FIELD
Tags.DATA_FIELD_ABSORPTION_PER_CM
Tags.DATA_FIELD_ALPHA_COEFF
Tags.DATA_FIELD_ANISOTROPY
Tags.DATA_FIELD_BLOOD_VOLUME_FRACTION
Tags.DATA_FIELD_DENSITY
Tags.DATA_FIELD_DIFFUSE_REFLECTANCE
Tags.DATA_FIELD_DIFFUSE_REFLECTANCE_POS
Tags.DATA_FIELD_FLUENCE
Tags.DATA_FIELD_GRUNEISEN_PARAMETER
Tags.DATA_FIELD_INITIAL_PRESSURE
Tags.DATA_FIELD_OXYGENATION
Tags.DATA_FIELD_PHOTON_EXIT_DIR
Tags.DATA_FIELD_PHOTON_EXIT_POS
Tags.DATA_FIELD_RECONSTRUCTED_DATA
Tags.DATA_FIELD_SCATTERING_PER_CM
Tags.DATA_FIELD_SEGMENTATION
Tags.DATA_FIELD_SPEED_OF_SOUND
Tags.DATA_FIELD_TIME_SERIES_DATA
Tags.DEFORMATION_X_COORDINATES_MM
Tags.DEFORMATION_Y_COORDINATES_MM
Tags.DEFORMATION_Z_ELEVATIONS_MM
Tags.DEFORMED_LAYERS_SETTINGS
Tags.DETECTOR_ELEMENT_WIDTH_MM
Tags.DIGITAL_DEVICE
Tags.DIGITAL_DEVICE_MSOT_ACUITY
Tags.DIGITAL_DEVICE_MSOT_INVISION
Tags.DIGITAL_DEVICE_POSITION
Tags.DIGITAL_DEVICE_RSOM
Tags.DIGITAL_DEVICE_SLIT_ILLUMINATION_LINEAR_DETECTOR
Tags.DIM_VOLUME_X_MM
Tags.DIM_VOLUME_Y_MM
Tags.DIM_VOLUME_Z_MM
Tags.DOWNSCALE_FACTOR
Tags.DO_FILE_COMPRESSION
Tags.DO_IPASC_EXPORT
Tags.ELLIPTICAL_TUBULAR_STRUCTURE
Tags.GPU
Tags.HORIZONTAL_LAYER_STRUCTURE
Tags.IGNORE_QA_ASSERTIONS
Tags.ILLUMINATION_DIRECTION
Tags.ILLUMINATION_PARAM1
Tags.ILLUMINATION_PARAM2
Tags.ILLUMINATION_POSITION
Tags.ILLUMINATION_TYPE
Tags.ILLUMINATION_TYPE_DISK
Tags.ILLUMINATION_TYPE_DKFZ_PAUS
Tags.ILLUMINATION_TYPE_FOURIER
Tags.ILLUMINATION_TYPE_FOURIER_X
Tags.ILLUMINATION_TYPE_FOURIER_X_2D
Tags.ILLUMINATION_TYPE_GAUSSIAN
Tags.ILLUMINATION_TYPE_IPASC_DEFINITION
Tags.ILLUMINATION_TYPE_MSOT_ACUITY_ECHO
Tags.ILLUMINATION_TYPE_MSOT_INVISION
Tags.ILLUMINATION_TYPE_PATTERN
Tags.ILLUMINATION_TYPE_PATTERN_3D
Tags.ILLUMINATION_TYPE_PENCIL
Tags.ILLUMINATION_TYPE_PENCILARRAY
Tags.ILLUMINATION_TYPE_PLANAR
Tags.ILLUMINATION_TYPE_RING
Tags.ILLUMINATION_TYPE_SLIT
Tags.IMAGE_PROCESSING
Tags.IMAGE_SCALING_CONSTANT
Tags.IMAGE_SCALING_EDGE
Tags.IMAGE_SCALING_STRETCH
Tags.IMAGE_SCALING_SYMMETRIC
Tags.IMAGE_SCALING_WRAP
Tags.INPUT_SEGMENTATION_VOLUME
Tags.ITERATIVE_RECONSTRUCTION_CONSTANT_REGULARIZATION
Tags.ITERATIVE_RECONSTRUCTION_MAX_ITERATION_NUMBER
Tags.ITERATIVE_RECONSTRUCTION_REGULARIZATION_SIGMA
Tags.ITERATIVE_RECONSTRUCTION_SAVE_INTERMEDIATE_RESULTS
Tags.ITERATIVE_RECONSTRUCTION_SAVE_LAST_FLUENCE
Tags.ITERATIVE_RECONSTRUCTION_STOPPING_LEVEL
Tags.ITERATIVE_qPAI_RESULT
Tags.KWAVE_PROPERTY_ALPHA_POWER
Tags.KWAVE_PROPERTY_DIRECTIVITY_ANGLE
Tags.KWAVE_PROPERTY_INITIAL_PRESSURE_SMOOTHING
Tags.KWAVE_PROPERTY_INTRINSIC_EULER_ANGLE
Tags.KWAVE_PROPERTY_PMLAlpha
Tags.KWAVE_PROPERTY_PMLInside
Tags.KWAVE_PROPERTY_PMLSize
Tags.KWAVE_PROPERTY_PlotPML
Tags.KWAVE_PROPERTY_SENSOR_MASK
Tags.KWAVE_PROPERTY_SENSOR_RECORD
Tags.K_WAVE_SPECIFIC_DT
Tags.K_WAVE_SPECIFIC_NT
Tags.LASER_PULSE_ENERGY_IN_MILLIJOULE
Tags.LINEAR_UNMIXING_COMPUTE_SO2
Tags.LINEAR_UNMIXING_NON_NEGATIVE
Tags.LINEAR_UNMIXING_RESULT
Tags.LINEAR_UNMIXING_SPECTRA
Tags.MATLAB_BINARY_PATH_VARNAME
Tags.MAX_DEFORMATION_MM
Tags.MCX_ASSUMED_ANISOTROPY
Tags.MCX_BINARY_PATH_VARNAME
Tags.MCX_SEED
Tags.MEDIUM_TEMPERATURE_CELCIUS
Tags.MODEL_SENSOR_FREQUENCY_RESPONSE
Tags.MOLECULE_COMPOSITION
Tags.MOVIENAME
Tags.NOISE_FREQUENCY
Tags.NOISE_MAX
Tags.NOISE_MEAN
Tags.NOISE_MIN
Tags.NOISE_MODE
Tags.NOISE_MODE_ADDITIVE
Tags.NOISE_MODE_MULTIPLICATIVE
Tags.NOISE_NON_NEGATIVITY_CONSTRAINT
Tags.NOISE_SCALE
Tags.NOISE_SHAPE
Tags.NOISE_STD
Tags.OPTICAL_MODEL
Tags.OPTICAL_MODEL_BINARY_PATH
Tags.OPTICAL_MODEL_ILLUMINATION_GEOMETRY_JSON_FILE
Tags.OPTICAL_MODEL_MCX
Tags.OPTICAL_MODEL_NUMBER_PHOTONS
Tags.OPTICAL_MODEL_OUTPUT_NAME
Tags.OPTICAL_MODEL_SETTINGS
Tags.OPTICAL_MODEL_TEST
Tags.OPTICAL_MODEL_UNITS
Tags.ORIGINAL_DATA
Tags.PARALLELEPIPED_STRUCTURE
Tags.PRIORITY
Tags.RANDOM_SEED
Tags.RECONSTRUCTION_ALGORITHM
Tags.RECONSTRUCTION_ALGORITHM_DAS
Tags.RECONSTRUCTION_ALGORITHM_DMAS
Tags.RECONSTRUCTION_ALGORITHM_SDMAS
Tags.RECONSTRUCTION_ALGORITHM_TEST
Tags.RECONSTRUCTION_ALGORITHM_TIME_REVERSAL
Tags.RECONSTRUCTION_APODIZATION_BOX
Tags.RECONSTRUCTION_APODIZATION_HAMMING
Tags.RECONSTRUCTION_APODIZATION_HANN
Tags.RECONSTRUCTION_APODIZATION_METHOD
Tags.RECONSTRUCTION_BMODE_AFTER_RECONSTRUCTION
Tags.RECONSTRUCTION_BMODE_BEFORE_RECONSTRUCTION
Tags.RECONSTRUCTION_BMODE_METHOD
Tags.RECONSTRUCTION_BMODE_METHOD_ABS
Tags.RECONSTRUCTION_BMODE_METHOD_HILBERT_TRANSFORM
Tags.RECONSTRUCTION_INVERSE_CRIME
Tags.RECONSTRUCTION_MITK_BINARY_PATH
Tags.RECONSTRUCTION_MITK_SETTINGS_XML
Tags.RECONSTRUCTION_MODE
Tags.RECONSTRUCTION_MODEL_SETTINGS
Tags.RECONSTRUCTION_MODE_DIFFERENTIAL
Tags.RECONSTRUCTION_MODE_FULL
Tags.RECONSTRUCTION_MODE_PRESSURE
Tags.RECONSTRUCTION_OUTPUT_NAME
Tags.RECONSTRUCTION_PERFORM_BANDPASS_FILTERING
Tags.RECONSTRUCTION_PERFORM_RESAMPLING_FOR_FFT
Tags.RECORDMOVIE
Tags.RECTANGULAR_CUBOID_STRUCTURE
Tags.SEGMENTATION_CLASS_MAPPING
Tags.SENSOR_BANDWIDTH_PERCENT
Tags.SENSOR_CENTER_FREQUENCY_HZ
Tags.SENSOR_CONCAVE
Tags.SENSOR_DIRECTIVITY_PATTERN
Tags.SENSOR_DIRECTIVITY_SIZE_M
Tags.SENSOR_ELEMENT_POSITIONS
Tags.SENSOR_LINEAR
Tags.SENSOR_NUM_ELEMENTS
Tags.SENSOR_NUM_USED_ELEMENTS
Tags.SENSOR_PITCH_MM
Tags.SENSOR_RADIUS_MM
Tags.SENSOR_SAMPLING_RATE_MHZ
Tags.SETTINGS
Tags.SIGNAL_THRESHOLD
Tags.SIMPA_NAMED_ABSORPTION_SPECTRUM_COPPER_SULPHIDE
Tags.SIMPA_NAMED_ABSORPTION_SPECTRUM_DEOXYHEMOGLOBIN
Tags.SIMPA_NAMED_ABSORPTION_SPECTRUM_FAT
Tags.SIMPA_NAMED_ABSORPTION_SPECTRUM_MELANIN
Tags.SIMPA_NAMED_ABSORPTION_SPECTRUM_NICKEL_SULPHIDE
Tags.SIMPA_NAMED_ABSORPTION_SPECTRUM_OXYHEMOGLOBIN
Tags.SIMPA_NAMED_ABSORPTION_SPECTRUM_WATER
Tags.SIMPA_OUTPUT_FILE_PATH
Tags.SIMPA_OUTPUT_NAME
Tags.SIMPA_SAVE_DIRECTORY_VARNAME
Tags.SIMPA_VERSION
Tags.SIMULATE_DEFORMED_LAYERS
Tags.SIMULATIONS
Tags.SIMULATION_PATH
Tags.SIMULATION_PIPELINE
Tags.SIMULATION_PROPERTIES
Tags.SPACING_MM
Tags.SPHERICAL_STRUCTURE
Tags.STRUCTURES
Tags.STRUCTURE_BIFURCATION_LENGTH_MM
Tags.STRUCTURE_CURVATURE_FACTOR
Tags.STRUCTURE_DIRECTION
Tags.STRUCTURE_ECCENTRICITY
Tags.STRUCTURE_END_MM
Tags.STRUCTURE_FIRST_EDGE_MM
Tags.STRUCTURE_RADIUS_MM
Tags.STRUCTURE_RADIUS_VARIATION_FACTOR
Tags.STRUCTURE_SECOND_EDGE_MM
Tags.STRUCTURE_SEGMENTATION_TYPE
Tags.STRUCTURE_START_MM
Tags.STRUCTURE_THIRD_EDGE_MM
Tags.STRUCTURE_TYPE
Tags.STRUCTURE_X_EXTENT_MM
Tags.STRUCTURE_Y_EXTENT_MM
Tags.STRUCTURE_Z_EXTENT_MM
Tags.TIME_STEP
Tags.TISSUE_PROPERTIES_OUPUT_NAME
Tags.TOTAL_TIME
Tags.TUKEY_BANDPASS_FILTER
Tags.TUKEY_WINDOW_ALPHA
Tags.UNITS_ARBITRARY
Tags.UNITS_PRESSURE
Tags.UPSAMPLED_DATA
Tags.US_GEL
Tags.VESSEL_STRUCTURE
Tags.VOLUME_CREATION_MODEL_SETTINGS
Tags.VOLUME_CREATOR
Tags.VOLUME_CREATOR_SEGMENTATION_BASED
Tags.VOLUME_CREATOR_VERSATILE
Tags.VOLUME_FRACTION
Tags.VOLUME_NAME
Tags.WAVELENGTH
Tags.WAVELENGTHS
TissueProperties
TissueProperties.normalized_merge()
TissueProperties.weighted_merge()
get_segmentation_colormap()
visualise_data()
visualise_device()