processing_components

• monospectral
  • noise
    • GammaNoise
      • GammaNoise.run()
    • GaussianNoise
      • GaussianNoise.run()
    • PoissonNoise
      • PoissonNoise.run()
    • SaltAndPepperNoise
      • SaltAndPepperNoise.run()
    • UniformNoise
      • UniformNoise.run()
  • FieldOfViewCropping
    • FieldOfViewCropping.run()
  • IterativeqPAI
    • IterativeqPAI.convergence_stopping_criterion()
    • IterativeqPAI.extract_initial_data_from_hdf5()
    • IterativeqPAI.forward_model_fluence()
    • IterativeqPAI.iterative_absorption_reconstruction()
    • IterativeqPAI.log_sum_squared_error()
    • IterativeqPAI.preprocessing_for_iterative_qpai()
    • IterativeqPAI.regularization_sigma()
    • IterativeqPAI.resampling_for_iterative_qpai()
    • IterativeqPAI.run()
    • IterativeqPAI.stacking_to_3d()
    • IterativeqPAI.standard_optical_properties()
    • IterativeqPAI.update_absorption_estimate()
• multispectral
  • LinearUnmixing
    • LinearUnmixing.build_chromophore_spectra_dict()
    • LinearUnmixing.calculate_sO2()
    • LinearUnmixing.create_absorption_matrix()
    • LinearUnmixing.create_chromophore_spectra_entry()
    • LinearUnmixing.flupai()
    • LinearUnmixing.run()
  • MultispectralProcessingAlgorithm
    • MultispectralProcessingAlgorithm.run()

class ProcessingComponentBase(global_settings, component_settings_key: str)

Bases: PipelineElementBase, ABC

Defines a pipeline processing component, which can be used to pre- or post-process simulation data.

Initialises the ProcessingComponent object.

Parameters:

component_settings_key – The key where the component settings are stored in